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Species belonging to selected taxon:

Pristionchus pacificus



ABOUT THIS RECORD

ID: MNEST038676
species: Pristionchus pacificus
miRNA family: mir-2241
source: miRBase, original name: ppc-mir-2241a-3 (MI0011236)

Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCGCAAGGATTCCTCAAGATC

miRNA*
TCTTCAGGATCCCTGTCTGAACA

mismatches: 5
bulges: 1

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pre-miRNA
GGAGACTAGGTCTATTCGATATTGCCTTGATCTTCAGGATCCCTGTCTGAACACAGAAATTGAGTGTTCGCAAGGATTCCTCAAGATCAGGGCTTCGAGT
CAGCTTCCCTTTACTTCC


dot-bracket secondary structure
((((...(((.((((((((....(((((((((((.((((..(((...(((((((.........)))))))..)))..)))).))))))))))).))))))
.))....)))...)))).



SIMILARITIES
miRBase ppc-mir-2241a-4: 6e-49

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-2241: 7e-49

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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